{"id":283,"date":"2012-10-03T21:10:23","date_gmt":"2012-10-03T21:10:23","guid":{"rendered":"http:\/\/carlonlab.com\/?page_id=7"},"modified":"2024-07-25T13:14:47","modified_gmt":"2024-07-25T13:14:47","slug":"publications","status":"publish","type":"page","link":"https:\/\/research.bowdoin.edu\/carlon-lab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<p>Bowdoin College students underlined<\/p>\n<h3>In review<\/h3>\n<p><strong>Carlon, D. B<\/strong>., <u>M. S. Garcia<\/u>, and A. Faucci. Coupling and de-coupling of the El Ni\u00f1o Southern Oscillation to the supply of larval fishes to benthic populations in the Hawaiian Islands. Accepted pending revisions to PLOS ONE.<\/p>\n<p>DuBois, K., J. H. Baumann,<u> E J. Charles<\/u>, <u>F. G. Ralph<\/u>, and <strong>D. B. Carlon<\/strong>. Shifting seagrass-oyster interactions can alleviate and amplify species response to ocean warming and acidification. Accepted pending revisions to Journal of Animal Ecology<\/p>\n<h3>Published<\/h3>\n<p>Adam, C. L., R. J. Toonen, <strong>D. B. Carlon<\/strong>, C. Zilbergerg, and M. S. Barbeitos. 2024. Genetic structuring and species boundaries in the Atlantic stony coral Favia (Scleractinia, Faviidae). Zoological Scripta. https:\/\/doi.org\/10.1111\/zsc.12652<\/p>\n<p>Jones, L. F.,\u00a0R N. Lou,\u00a0C. S. Murray,\u00a0\u00a0D. Robert,\u00a0C. M Bourne,\u00a0\u00a0C. Bouchard,\u00a0\u00a0M. Ku\u010dka,\u00a0\u00a0Y. Frank Chan,\u00a0\u00a0<strong>D. B Carlon<\/strong>, D. N. Wiley,\u00a0\u00a0N. O. Therkildsen,\u00a0\u00a0and H. Baumann. 2022. Two distinct population clusters of northern sand lance (Ammodytes dubius) on the northwest Atlantic shelf revealed by whole genome sequencing.\u00a0ICES Journal of Marine Science, fsac217,\u00a0https:\/\/doi.org\/10.1093\/icesjms\/fsac217<\/p>\n<p>Marchenko, J., M. Katolikova,\u00a0R. V\u00e4in\u00f6l\u00e4, S. E. Kingston, <strong>D. B. Carlon<\/strong>, M. Gantsevich, and P. Strelkov. 2022. Species identification based on a semi-diagnostic marker: evaluation of a simple conchological test for distinguishing blue mussels Mytilus edulis L. and M. trossulus Gould. PlOS ONE 16:e0249587<\/p>\n<p><strong>Carlon, D. B.<\/strong>, D. R. Robertson, <u>R. L. Barron<\/u>, J. H. Choat, <u>D. J. Anderson<\/u>, S. A. Schwartz, and C. A. S\u00e1nchez-Ortiz. 2021. The origin of the parrotfish species Scarus compressus in the Tropical Eastern Pacific: region-wide hybridization between ancient species pairs. BMC Ecology and Evolution 21, 7 (2021). https:\/\/doi.org\/10.1186\/s12862-020-01731-3<\/p>\n<p>Olsen, K. C., W. H. Ryan, A. A. Winn, E. T. Kosman, J. A. Moscoso, S. A. Krueger\u2010Hadfield, S. C. Burgess, <strong>D. B. Carlon<\/strong>, R. K. Grosberg, and S. Kalisz. 2020. Inbreeding shapes the evolution of marine invertebrates. Evolution 74:871-882.<\/p>\n<p><u>Martino, P. A.<\/u>, <strong>D. B. Carlon<\/strong> and S. E. Kingston. 2019. Blue mussel (Genus Mytilus) transcriptome response to simulated climate change in the Gulf of Maine. Journal of Shellfish Research 38: 587-602.<\/p>\n<p><u>Coyle, A.<\/u>, <u>Voss, E.<\/u>, Tepolt, C.K., and <strong>D. B. Carlon<\/strong>. 2019. Mitochondrial genotype determines the response to cold stress in the European green crab, <em>Carcinus maenas.<\/em> Journal of Experimental Biology. <span class=\"highwire-cite-metadata-pages highwire-cite-metadata\">jeb.203521 <\/span><span class=\"highwire-cite-metadata-doi highwire-cite-metadata\">doi:\u00a010.1242\/jeb.203521<\/span> Early view <a href=\"https:\/\/jeb.biologists.org\/content\/early\/2019\/07\/08\/jeb.203521\">pdf<\/a><\/p>\n<p><strong>Carlon, D. B.<\/strong>, <u>P. Warner<\/u>, <u>C. Starr<\/u>, <u>D. J. Anderson<\/u>, <u>Z. Bulmer<\/u>, <u>H. Cipparone<\/u>, <u>J. Dunn<\/u>, <u>C. Godfrey<\/u>, <u>C. Goffinet<\/u>, <u>M. Miller<\/u>, and<u> C. Nash<\/u>, 2018. A first report of shell disease impacting <em>Cancer borealis <\/em>(Jonah Crab) in the Bay of Fundy. Northeastern Naturalist <strong>25<\/strong>: 27-31.<\/p>\n<p>Kingston, S. E., <u>P. Martino<\/u>, M. Melendy, F. A. Reed, and <strong>D. B. Carlon<\/strong>, 2017. Linking genotype to phenotype in a changing ocean: inferring the genomic architecture of a blue mussel stress response with genome\u2010wide association. Journal of Evolutionary Biology <strong>31: <\/strong>346-361.<\/p>\n<p>Longenecker, K., Y. L. Chan, R. J. Toonen, <strong>D. B. Carlon<\/strong>, T. L. Hunt, A. M. Friedlander, and E. E. Demartini. 2014. Archaeological evidence of validity of fish populations on unexploited Reefs as Proxy Targets for Modern Populations. Conservation Biology. 28: 1322-1330<\/p>\n<p>Baums, I. B., L. Scott Godwin, E. C. Franklin, <strong>D. B. Carlon<\/strong>, and R. J. Toonen. 2014. Discordant population expansions in four species of coral-associated Pacific hermit crabs (Anomura: Diogenidae) linked to habitat availability resulting from sea-level change. Journal of Biogeography 41:339-352.<\/p>\n<p>Halbert, K. M., E. Goetze, and <strong>D. B. Carlon<\/strong>. 2013. High Cryptic Diversity across the Global Range of the Migratory Planktonic Copepods <em>Pleuromamma piseki<\/em> and <em>P. gracilis<\/em>. PLoS One 8: e77011.<\/p>\n<p>Schwartz, S., Budd, A. F., and <strong>D. B. Carlon<\/strong>. 2012. Molecules and fossils reveal punctuated diversification in Caribbean &#8220;faviid&#8221; corals. BMC Evolutionary Biology. 12:123 doi:10.1186\/1471-2148-12-123<\/p>\n<p><strong>Carlon, D. B.<\/strong>, Budd, A. F., Lipp\u00e9, C., and R. L. Andrew. 2011. The quantitative genetics of incipient speciation: heritability and genetic correlations of skeletal traits in populations of diverging <em>Favia fragum<\/em> ecomorphs. Evolution 65: 3428-3447.<\/p>\n<p>Tice K. and <strong>Carlon, D. B<\/strong>. 2011. Can AFLP genome scans detect small islands of differentiation? The case of shell sculpture variation in the periwinkle <em>Echinolittorina hawaiiensis<\/em>.\u00a0 Journal of Evolutionary Biology 24: 1814-1825.<\/p>\n<p><strong>Carlon, D. B<\/strong>. and C. Lipp\u00e9.\u00a0 2011.\u00a0 Estimation of the mating systems of the Tall and Short ecomorph of the coral <em>Favia fragum<\/em>. Molecular Ecology 20: 812-848<\/p>\n<p>Fitzpatrick, J., <strong>Carlon, D. B.<\/strong>, Lipp\u00e9, C., and D. R. Robertson. 2011.\u00a0 The West Pacific diversity hotspot as a source or sink for new species? Population genetic insights from the Indo-Pacific parrotfish <em>Scarus rubroviolaceus<\/em>. Molecular Ecology 20: 219-234.<\/p>\n<p>VanderWerf, E. A, <span style=\"text-decoration: underline\">Young, L. C<\/span>., <span style=\"text-decoration: underline\">Yeung, N. W.<\/span>, and <strong>D. B. Carlon<\/strong>. 2009. Stepping stone speciation in Hawaii\u2019s flycatchers: Molecular divergence supports new island endemics within the \u2018elepaio. Conservation Genetics 11: 1283-1298<\/p>\n<p>Yeung, N. W., <strong>Carlon, D. B.<\/strong>, and S. Conant.\u00a0 2009. Testing subspecies hypothesis with molecular markers and morphometrics in the Pacific white tern complex. Biological Journal of the Linnean Society 98: 586\u2013595.<\/p>\n<p><strong>Carlon, D. B.<\/strong> and C. Lipp\u00e9. 2008.\u00a0 Fifteen new microsatellite markers for the reef coral <em>Favia fragum<\/em> and a new <em>Symbiodinium<\/em> microsatellite. Molecular Ecology Notes 8: 870-873.<\/p>\n<p><strong>Carlon, D. B. <\/strong>and C. Lipp\u00e9.\u00a0 2007.\u00a0 Eleven new microsatellite markers for the tropical sea urchin <em>Tripneustes gratilla<\/em> and cross-amplification in <em>Tripneustes ventricosa. <\/em>Molecular Ecology Notes 7: 1002-1004<em>.<\/em><\/p>\n<p><strong>Carlon, D. B<\/strong>. and C. Lipp\u00e9.\u00a0 2007.\u00a0 Isolation and characterization of 17 new microsatellite markers for the Ember parrotfish (<em>Scarus rubroviolaceus<\/em>), and cross-amplification in four other parrotfish species. Molecular Ecology Notes 7: 613-616.<\/p>\n<p>Crohn, D. M., Ruud, N. C, Decruyenaere, J. G., and <strong>D. B. Carlon<\/strong>. 2005.\u00a0 Goodness-of-fit test for modeling tracer breakthrough curves in wetlands. Journal of Environmental Engineering 131: 242-251.<\/p>\n<p>Edmunds, P. J., Bruno, J. F., and <strong>D. B. Carlon<\/strong>. 2004.\u00a0 Effects of depth and microhabitat on growth and survivorship of juvenile corals in the Florida Keys. Marine Ecology Progress Series 278: 115-124.<\/p>\n<p><a href=\"https:\/\/research.bowdoin.edu\/carlon-lab\/files\/2012\/10\/Evolution_cover1.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-71\" title=\"Evolution_cover\" src=\"https:\/\/research.bowdoin.edu\/carlon-lab\/files\/2012\/10\/Evolution_cover1.jpg\" alt=\"\" width=\"254\" height=\"249\" srcset=\"https:\/\/research.bowdoin.edu\/carlon-lab\/files\/2012\/10\/Evolution_cover1.jpg 502w, https:\/\/research.bowdoin.edu\/carlon-lab\/files\/2012\/10\/Evolution_cover1-300x294.jpg 300w, https:\/\/research.bowdoin.edu\/carlon-lab\/files\/2012\/10\/Evolution_cover1-250x245.jpg 250w\" sizes=\"auto, (max-width: 254px) 100vw, 254px\" \/><\/a><\/p>\n<p>Cover art by the late Margaret Carlon<\/p>\n<p><strong>Carlon, D. B.<\/strong> and A. F. Budd. 2002.\u00a0 Incipient speciation across a depth gradient in a scleractinian coral? Evolution 56: 2227\u20132242.<\/p>\n<p><strong>Carlon, D. B.<\/strong> 2002.\u00a0 Production and supply of larvae as determinants of zonation in a brooding tropical coral.\u00a0 Journal of Experimental Marine Biology and Ecology 268: 33-46.<\/p>\n<p><strong>Carlon, D. B.<\/strong> 2001.\u00a0 Depth-related patterns of coral recruitment and cryptic suspension-feeding invertebrates on Guana Island, British Virgin Islands<em>. <\/em>Bulletin of Marine Science 68: 525-541.<\/p>\n<p><strong>Carlon, D. B.<\/strong> 1999. The evolution of mating systems in tropical reef corals. Trends in Ecology &amp; Evolution 14: 491-495.<\/p>\n<p><strong>Carlon, D. B.<\/strong> 1996. Calcification rates in corals. Science 274: 117.<\/p>\n<p><strong>Carlon, D.B.<\/strong> and J.P. Ebersole. 1995. Life history variation among three temperate hermit crabs: the importance of size in reproductive strategies. Biological Bulletin 188: 329-337.<\/p>\n<p><strong>Carlon, D.B.<\/strong> and R.R. Olson. 1993. Short distance dispersal as an explanation of spatial pattern in two Caribbean reef corals. Journal of Experimental Marine Biology and Ecology 173: 247-263.<\/p>\n<p>Olson, R. and <strong>D. Carlon.<\/strong> 1993. Dispersal of Caribbean coral larvae<em>. <\/em>National Geographic Research and Exploration 9: 379-380.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Bowdoin College students underlined In review Carlon, D. B., M. S. Garcia, and A. Faucci. Coupling and de-coupling of the El Ni\u00f1o Southern Oscillation to the supply of larval fishes to benthic populations in the Hawaiian Islands. Accepted pending revisions to PLOS ONE. DuBois, K., J. H. Baumann, E J. Charles, F. G. Ralph, and [&hellip;]<\/p>\n","protected":false},"author":39,"featured_media":0,"parent":0,"menu_order":6,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-283","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/research.bowdoin.edu\/carlon-lab\/wp-json\/wp\/v2\/pages\/283","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/research.bowdoin.edu\/carlon-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/research.bowdoin.edu\/carlon-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/research.bowdoin.edu\/carlon-lab\/wp-json\/wp\/v2\/users\/39"}],"replies":[{"embeddable":true,"href":"https:\/\/research.bowdoin.edu\/carlon-lab\/wp-json\/wp\/v2\/comments?post=283"}],"version-history":[{"count":0,"href":"https:\/\/research.bowdoin.edu\/carlon-lab\/wp-json\/wp\/v2\/pages\/283\/revisions"}],"wp:attachment":[{"href":"https:\/\/research.bowdoin.edu\/carlon-lab\/wp-json\/wp\/v2\/media?parent=283"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}